Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802131.4b.5a.2a.1b with 22 members (charged multivesicular body protein)

Eukaryota / Viridiplantae / Streptophyta / Streptophytina / Embryophyta / Tracheophyta / Euphyllophyta / Spermatophyta /

Completeness score: 0.15

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

39.6%

This HOG has 21 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0801729	Eukaryota	1891		61.1%	1
HOG:E0803042	Eukaryota	252		59.5%	1
HOG:E0008864	p__Thermoproteota	72		8.3%	1
HOG:E0811853	Eukaryota	14		71.4%	1
HOG:E0040925	Metamonada	13		84.6%	1
HOG:E0817083	Eukaryota	13		46.2%	1
HOG:E0798235	Opisthokonta	9		66.7%	1
HOG:E0829928	Eukaryota	7		42.9%	1
HOG:E0295633	Magnoliopsida	6		66.7%	1
HOG:E0316733	Embryophyta	5		60.0%	1
HOG:E0657673	Protostomia	5		80.0%	1
HOG:E0000140	p__Asgardarchaeota	4		50.0%	1
HOG:E0238233	Brassica	4		100.0%	1
HOG:E0329394	Chytridiomycetes	4		50.0%	1
HOG:E0502919	Echinococcus	4		100.0%	1
HOG:E0758022	Chordata	4		50.0%	1
HOG:E0230391	lamiids	3		66.7%	1
HOG:E0301686	Spermatophyta	3		66.7%	1
HOG:E0331928	Rhizopus	3		66.7%	1
HOG:E0483649	Fungi	3		66.7%	1

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